Index

_ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U | V | W | X | Y

_

__eq__() (dose.Constraint method)
__ge__() (dose.Constraint method)
__getitem__() (dose.ConstraintList method)
(history.PlanningHistory method)
__gt__() (dose.Constraint method)
__iadd__() (anatomy.Anatomy method)
(dose.ConstraintList method)
(history.PlanningHistory method)
__isub__() (anatomy.Anatomy method)
(dose.ConstraintList method)
__iter__() (dose.ConstraintList method)
__le__() (dose.Constraint method)
__lt__() (dose.Constraint method)
__str__() (anatomy.Anatomy method)
(dose.Constraint method)
(dose.ConstraintList method)
(physics.DoseFrame method)
(prescription.Prescription method)
(structure.Structure method)

A

A (case.Case attribute)
(structure.Structure attribute)
A_full (structure.Structure attribute)
A_mean (structure.Structure attribute)
active (dose.Constraint attribute)
add_constraint() (case.Case method)
add_dose_frame() (physics.Physics method)
add_structure_to_dictionaries() (prescription.Prescription method)
anatomy (case.Case attribute)
Anatomy (class in anatomy)
anatomy (module)
assign_dose() (structure.Structure method)
available_frames (physics.Physics attribute)

B

beam_labels (physics.DoseFrame attribute)
beam_lookup_by_label() (physics.DoseFrame method)
beam_weights (physics.DoseFrame attribute)
beam_weights_by_label() (physics.Physics method)
beams (physics.DoseFrame attribute)
(physics.Physics attribute)
boost (structure.Structure attribute)
build() (solver_cvxpy.SolverCVXPY method)

C

calc_y() (structure.Structure method)
calculate_dose() (structure.Structure method)
calculate_doses() (anatomy.Anatomy method)
(case.Case method)
Case (class in case)
case (module)
change_constraint() (case.Case method)
change_dose_frame() (physics.Physics method)
change_objective() (case.Case method)
clear() (dose.ConstraintList method)
(solver_cvxpy.SolverCVXPY method)
clear_constraints() (anatomy.Anatomy method)
(case.Case method)
collapsable (structure.Structure attribute)
Constraint (class in dose)
constraint_dict (prescription.Prescription attribute)
constraint_dual_vars (SolverCVXPY attribute)
ConstraintList (class in dose)
constraints (history.RunProfile attribute)
(structure.Structure attribute)
constraints_by_label (prescription.Prescription attribute)
constraints_string (structure.Structure attribute)
contains() (dose.ConstraintList method)

D

D() (in module dose)
d_strip() (in module prescription)
data (dose.DVH attribute)
data_loaded (physics.Physics attribute)
dict (prescription.Prescription attribute)
digest() (prescription.Prescription method)
dose (dose.Constraint attribute)
(module)
(structure.Structure attribute)
dose_achieved (dose.Constraint attribute)
dose_at_percentile() (dose.DVH method)
dose_grid (physics.Physics attribute)
dose_matrix (physics.DoseFrame attribute)
(physics.Physics attribute)
dose_matrix_by_label() (physics.Physics method)
dose_rx (structure.Structure attribute)
dose_summary_data() (anatomy.Anatomy method)
dose_summary_string (anatomy.Anatomy attribute)
dose_unit (structure.Structure attribute)
DoseFrame (class in physics)
drop_constraint() (case.Case method)
dual_value (dose.Constraint attribute)
DVH (class in dose)
dvh (structure.Structure attribute)

E

eval_constraint() (in module prescription)

F

feasible (history.RunRecord attribute)
frame (physics.Physics attribute)

G

gamma (history.RunProfile attribute)
gather_physics_from_anatomy() (case.Case method)
get_dual_value() (solver_cvxpy.SolverCVXPY method)
get_dvh_slope() (solver_cvxpy.SolverCVXPY method)
get_maxmargin_fulfillers() (dose.PercentileConstraint method)
get_slack_value() (solver_cvxpy.SolverCVXPY method)

H

history (module)

I

indices_by_label() (physics.DoseFrame static method)
info (history.RunRecord attribute)
init_problem() (solver_cvxpy.SolverCVXPY method)
is_empty (anatomy.Anatomy attribute)
is_target (structure.Structure attribute)
items (dose.ConstraintList attribute)

K

keys (dose.ConstraintList attribute)

L

label (structure.Structure attribute)
label_order (anatomy.Anatomy attribute)
labels (anatomy.Anatomy attribute)
last_feasible (history.PlanningHistory attribute)
last_info (history.PlanningHistory attribute)
last_key (dose.ConstraintList attribute)
last_solvetime (history.PlanningHistory attribute)
last_solvetime_exact (history.PlanningHistory attribute)
last_x (history.PlanningHistory attribute)
last_x_exact (history.PlanningHistory attribute)
list (anatomy.Anatomy attribute)
(dose.ConstraintList attribute)
(prescription.Prescription attribute)
load_physics_to_anatomy() (case.Case method)

M

mark_data_as_loaded() (physics.Physics method)
max_dose (dose.DVH attribute)
(structure.Structure attribute)
MAX_LENGTH (dose.DVH attribute)
MaxConstraint (class in dose)
mean_dose (structure.Structure attribute)
mean_only (dose.ConstraintList attribute)
MeanConstraint (class in dose)
min_dose (dose.DVH attribute)
(structure.Structure attribute)
MinConstraint (class in dose)

N

n_beams (case.Case attribute)
(solver_cvxpy.SolverCVXPY attribute)
n_structures (anatomy.Anatomy attribute)
(case.Case attribute)
n_voxels (case.Case attribute)
name (structure.Structure attribute)
no_run_check() (history.PlanningHistory method)
nonzero_beam_count (history.RunRecord attribute)
nonzero_beam_count_exact (history.RunRecord attribute)

O

objective_string (structure.Structure attribute)
objective_value (solver_cvxpy.SolverCVXPY attribute)
objectives (history.RunProfile attribute)
optimal_dvh_slopes (history.RunOutput attribute)
optimal_variables (history.RunOutput attribute)
output (history.RunRecord attribute)

P

percentile (dose.PercentileConstraint attribute)
percentile_at_dose() (dose.DVH method)
PercentileConstraint (class in dose)
physics (case.Case attribute)
Physics (class in physics)
physics (module)
plan() (case.Case method)
plannable (anatomy.Anatomy attribute)
(case.Case attribute)
(physics.DoseFrame attribute)
(physics.Physics attribute)
(structure.Structure attribute)
PlanningHistory (class in history)
PlanningProblem (class in problem)
plot (module)
plotting_data (dose.ConstraintList attribute)
(dose.DVH attribute)
(dose.MaxConstraint attribute)
(dose.MeanConstraint attribute)
(dose.MinConstraint attribute)
(dose.PercentileConstraint attribute)
(history.RunRecord attribute)
plotting_data() (anatomy.Anatomy method)
(case.Case method)
(structure.Structure method)
populated (dose.DVH attribute)
prescription (case.Case attribute)
Prescription (class in prescription)
prescription (module)
priority (dose.Constraint attribute)
problem (case.Case attribute)
(SolverCVXPY attribute)
(module)
profile (history.RunRecord attribute)
propagate_doses() (anatomy.Anatomy method)
(case.Case method)
pull_constraints() (history.RunProfile method)
pull_objectives() (history.RunProfile method)

R

relop (dose.Constraint attribute)
report() (prescription.Prescription method)
report_string() (prescription.Prescription method)
resample() (dose.DVH method)
reset_matrices() (structure.Structure method)
resolved (dose.Constraint attribute)
run_tags (history.PlanningHistory attribute)
RunOutput (class in history)
RunProfile (class in history)
RunRecord (class in history)
runs (history.PlanningHistory attribute)
rx_dose (dose.Constraint attribute)
rx_list (prescription.Prescription attribute)

S

satisfies() (structure.Structure method)
set_constraint() (structure.Structure method)
shape (physics.DoseFrame attribute)
size (anatomy.Anatomy attribute)
(dose.ConstraintList attribute)
(structure.Structure attribute)
slack (dose.Constraint attribute)
solve() (problem.PlanningProblem method)
(solver_cvxpy.SolverCVXPY method)
solveiters (solver_cvxpy.SolverCVXPY attribute)
solver (problem.PlanningProblem attribute)
solver_cvxpy (module)
(problem.PlanningProblem attribute)
SOLVER_DEFAULT (in module solver_cvxpy)
solver_info (history.RunOutput attribute)
solver_optkit (module)
solver_pogs (problem.PlanningProblem attribute)
SolverCVXPY (class in solver_cvxpy)
SolverOptkit (in module solver_optkit)
solvetime (history.RunOutput attribute)
(history.RunRecord attribute)
(solver_cvxpy.SolverCVXPY attribute)
solvetime_exact (history.RunOutput attribute)
(history.RunRecord attribute)
status (solver_cvxpy.SolverCVXPY attribute)
Structure (class in structure)
structure (module)
structure_dict (prescription.Prescription attribute)
structures (anatomy.Anatomy attribute)
(case.Case attribute)
summary() (structure.Structure method)
summary_string (structure.Structure attribute)
symbol (dose.Constraint attribute)

T

tag_last() (history.PlanningHistory method)
threshold (dose.Constraint attribute)
transfer_rx_constraints_to_anatomy() (case.Case method)

U

unique_frames (physics.Physics attribute)
upper (dose.Constraint attribute)
use_2pass (history.RunProfile attribute)
use_slack (history.RunProfile attribute)

V

v_strip() (in module prescription)
voxel_labels (physics.DoseFrame attribute)
(physics.Physics attribute)
voxel_lookup_by_label() (physics.DoseFrame method)
voxel_weights (physics.DoseFrame attribute)
(structure.Structure attribute)
voxel_weights_by_label() (physics.Physics method)
voxels (physics.DoseFrame attribute)
(physics.Physics attribute)

W

W_NONTARG_DEFAULT (in module structure)
W_OVER_DEFAULT (in module structure)
W_UNDER_DEFAULT (in module structure)

X

x (history.RunOutput attribute)
(history.RunRecord attribute)
(solver_cvxpy.SolverCVXPY attribute)
x_dual (solver_cvxpy.SolverCVXPY attribute)
x_exact (history.RunOutput attribute)
(history.RunRecord attribute)
x_pass1 (history.RunRecord attribute)
x_pass2 (history.RunRecord attribute)

Y

y (structure.Structure attribute)
y_mean (structure.Structure attribute)